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530000-5 ; 925410

⇧ RWTH Aachen ⇧

Recent Publications

All known publications ...
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http://join2-wiki.gsi.de/foswiki/pub/Main/Artwork/join2_logo100x88.png Journal Article Cesaro, G. ; Nagai, J. S.RWTH* ; Gnoato, N. ; Chiodi, A. ; Tussardi, G. ; Klöker, V.RWTH* ; Musumarra, C. V. ; Mosca, E. ; Costa, I. G.RWTH* ; Di Camillo, B. (Corresponding author) ; Calura, E. ; Baruzzo, G.
Advances and challenges in cell–cell communication inference: a comprehensive review of tools, resources, and future directions
Briefings in Bioinformatics 26(3), bbaf280 (2025) [10.1093/bib/bbaf280]2025     Files BibTeX | EndNote: XML, Text | RIS

http://join2-wiki.gsi.de/foswiki/pub/Main/Artwork/join2_logo100x88.png Journal Article Joodaki, M.RWTH* ; Shaigan, M.RWTH* ; Samiei, S.RWTH* ; Nagai, J.RWTH* ; Maié, T.RWTH* ; Kuppe, C.RWTH* ; Costa, I. G. (Corresponding author)RWTH*
PILOT-GM-VAE: patient-level analysis of single-cell disease atlas with optimal transport of Gaussian mixture variational autoencoders
Briefings in Bioinformatics 26(5), bbaf547 (2025) [10.1093/bib/bbaf547]2025     Files BibTeX | EndNote: XML, Text | RIS

http://join2-wiki.gsi.de/foswiki/pub/Main/Artwork/join2_logo100x88.png Journal Article Nagai, J. S. (Corresponding author)RWTH* ; Maié, T.RWTH* ; Schaub, M. T. (Corresponding author)RWTH* ; Costa, I. G. (Corresponding author)RWTH*
scACCorDiON: a clustering approach for explainable patient level cell–cell communication graph analysis Open Access
Bioinformatics 41(5), btaf288 (2025) [10.1093/bioinformatics/btaf288]2025     Files BibTeX | EndNote: XML, Text | RIS

http://join2-wiki.gsi.de/foswiki/pub/Main/Artwork/join2_logo100x88.png Journal Article Gleitz, H. F. E.RWTH* ; Fuchs, S. N. R. ; Snoeren, I. A. M. ; Boys, C. ; Nagai, J.RWTH* ; Tejeda-Mora, H. ; Klöker, V.RWTH* ; Pritchard, J. E.RWTH* ; Bakker, I. J. ; Gargallo Garasa, M. ; Bindels, E. ; Saez-Rodriguez, J. ; Vogl, T. ; Kramann, R.RWTH* ; Dugourd, A. ; Costa, I. G.RWTH* ; Schneider, R. K. (Corresponding author)RWTH*
Inhibiting the alarmin-driven hematopoiesis-stromal cell crosstalk in primary myelofibrosis ameliorates bone marrow fibrosis
HemaSphere : open access journal of the European Hematology Association 9(8), e70179 (2025) [10.1002/hem3.70179]2025     Files BibTeX | EndNote: XML, Text | RIS

http://join2-wiki.gsi.de/foswiki/pub/Main/Artwork/join2_logo100x88.png Journal Article Kuehl, M. (Corresponding author) ; Okabayashi, Y. (Corresponding author) ; Wong, M. N. ; et al
Pathology-oriented multiplexing enables integrative disease mapping
Nature : international weekly journal of science 644(8076), 516-526 (2025) [10.1038/s41586-025-09225-2]2025     Files BibTeX | EndNote: XML, Text | RIS

http://join2-wiki.gsi.de/foswiki/pub/Main/Artwork/join2_logo100x88.png Journal Article Cheng, M.RWTH* ; Jansen, J.RWTH* ; Reimer, K. C.RWTH* ; Grande, V. P.RWTH* ; Nagai, J. S.RWTH* ; Li, Z. ; Kießling, P.RWTH* ; Grasshoff, M.RWTH* ; Kuppe, C.RWTH* ; Schaub, M. T.RWTH* ; Kramann, R. (Corresponding author)RWTH* ; Costa, I. G. (Corresponding author)RWTH*
PHLOWER leverages single-cell multimodal data to infer complex, multi-branching cell differentiation trajectories
Nature methods (2025) [10.1038/s41592-025-02870-5]2025     Files BibTeX | EndNote: XML, Text | RIS

http://join2-wiki.gsi.de/foswiki/pub/Main/Artwork/join2_logo100x88.png Preprint Schöneich, J.RWTH* ; Dupont, A.RWTH* ; Schlößer, S.RWTH* ; Schmitz, M.RWTH* ; Richter, I.RWTH* ; Gubbi, N. M. K. P.RWTH* ; Cheng, M.RWTH* ; Maié, T.RWTH* ; Jäverfelt, S. ; Imdahl, F. ; Toussaint, C. ; Saliba, A.-E. ; Kuppe, C.RWTH* ; Pelaseyed, T. ; Costa, I. G.RWTH* ; Hornef, M. W. (Corresponding author)RWTH*
Developmental factors drive the compartmentalised and discontinuous maturation of the small intestinal epithelium during the early postnatal period
43 Seiten (2025) [10.1101/2025.05.15.654215]2025     Files BibTeX | EndNote: XML, Text | RIS

http://join2-wiki.gsi.de/foswiki/pub/Main/Artwork/join2_logo100x88.png Journal Article Merz, S. ; Senée, V. ; Philippi, A. ; Oswald, F. ; Shaigan, M.RWTH* ; Führer, M. ; Drewes, C. ; Allgöwer, C. ; Öllinger, R. ; Heni, M. ; Boland, A. ; Deleuze, J.-F. ; Birkhofer, F. ; Gusmao, E. G. ; Wagner, M. ; Hohwieler, M. ; Breunig, M. ; Rad, R. ; Siebert, R. ; Messerer, D. A. C. ; Costa, I. G.RWTH* ; Alvarez, F. ; Julier, C. (Corresponding author) ; Kleger, A. (Corresponding author) ; Heller, S. (Corresponding author)
A ONECUT1 regulatory, non-coding region in pancreatic development and diabetes
Cell reports 43(11), 114853 (2024) [10.1016/j.celrep.2024.114853]2024     Files BibTeX | EndNote: XML, Text | RIS

http://join2-wiki.gsi.de/foswiki/pub/Main/Artwork/join2_logo100x88.png Contribution to a book/Contribution to a conference proceedings Nagai, J. S.RWTH* ; Costa, I. G.RWTH* ; Schaub, M. T.RWTH*
Optimal Transport Distances for Directed, Weighted Graphs: A Case Study With Cell-Cell Communication Networks
20242024 IEEE International Conference on Acoustics, Speech, and Signal Processing : proceedings : 14-19 April 2024, COEX, Seoul, Korea / sponsored by: the Institute of Electrical and Electronics Engineers, Signal Processing Society ; general chair: Hanseok Ko (Korea Univ., Korea) ; publication chair: Hajin Yu (Univ. of Seoul, Korea), Jeongsik Park (HUFS, Korea)
49. IEEE International Conference on Acoustics, Speech, and Signal Processing, ICASSP 2024, SeoulSeoul, South Korea, 14 Apr 2024 - 19 Apr 20242024-04-142024-04-19 Piscataway, NJ : IEEE 9856-9860 (2024) [10.1109/ICASSP48485.2024.10446503]2024   BibTeX | EndNote: XML, Text | RIS

http://join2-wiki.gsi.de/foswiki/pub/Main/Artwork/join2_logo100x88.png Journal Article Schmidt, M.RWTH* ; Maié, T.RWTH* ; Cramer, T.RWTH* ; Costa, I. G.RWTH* ; Wagner, W. (Corresponding author)RWTH*
Cancer-associated fibroblasts reveal aberrant DNA methylation across different types of cancer
Clinical epigenetics 16, 164 (2024) [10.1186/s13148-024-01783-y]2024     Files BibTeX | EndNote: XML, Text | RIS

All known publications ...
Download: BibTeX | EndNote XML,  Text | RIS |